TF_ChIP-seq_ENCSR912NEF
TF_ChIP-seq ENCSR912NEF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MGA" and target="MGA"]
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| Id: | TF_ChIP-seq/ENCSR912NEF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR912NEF [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MGA" and target="MGA"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MGA output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN611OYP|/analyses/ENCAN611OYP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF138ONG|/files/ENCFF138ONG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF138ONG|/files/ENCFF138ONG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.43. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF455ETM|/files/ENCFF455ETM/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF455ETM|/files/ENCFF455ETM/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.09. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR912NEF | float |
TF_ChIP-seq_ENCSR912NEF |
TF_ChIP-seq ENCSR912NEF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MGA" and target="MGA"]
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[12.9, 700] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF774KWE.bed.gz | 760.19 KB | 0084f589b416202ab0dee6262ccf58e0 |
| ENCFF774KWE.bed.gz.dvc | 100.0 B | c53c72195ed958b58ec0cff8fe57f8d5 |
| ENCFF774KWE.tabix.bed.gz | 673.98 KB | 842c27a3090597f5f57447e0a5cfcba4 |
| ENCFF774KWE.tabix.bed.gz.dvc | 106.0 B | a4a4ba5c5df3d093f21f036af8b42786 |
| ENCFF774KWE.tabix.bed.gz.tbi | 177.23 KB | 00d5db7adab6989609268f2338329de0 |
| ENCFF774KWE.tabix.bed.gz.tbi.dvc | 110.0 B | b9bad385e0365e03e5ec5fa3c8df0a2a |
| genomic_resource.yaml | 4.21 KB | d5d7223302b5b0b0ff2fd6ac3016b06d |
| genomic_resource_original.yaml | 4.06 KB | 316daa27e4c18bee7901357740138f36 |
| statistics/ |