TF_ChIP-seq_ENCSR912ATU
TF_ChIP-seq ENCSR912ATU [biosample_summary="Homo sapiens MCF-7" and target="ZNF217"]
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| Id: | TF_ChIP-seq/ENCSR912ATU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR912ATU [biosamplesummary="Homo sapiens MCF-7" and target="ZNF217"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN253UAC|/analyses/ENCAN253UAC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN253UAC|/analyses/ENCAN253UAC/} has in progress subobject document {3e2f9755-bdc5-45a8-8b6e-1bbc505a5f47|/documents/3e2f9755-bdc5-45a8-8b6e-1bbc505a5f47/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF478PMI|/files/ENCFF478PMI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF478PMI|/files/ENCFF478PMI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.64. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR912ATU | float |
TF_ChIP-seq_ENCSR912ATU |
TF_ChIP-seq ENCSR912ATU [biosample_summary="Homo sapiens MCF-7" and target="ZNF217"]
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[13.5, 489] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF607VIS.bed.gz | 41.02 KB | 7606072090eabe6a02acf1e28952b4b6 |
| ENCFF607VIS.bed.gz.dvc | 99.0 B | 35de17256ba5cade46eb4211d62dd4c5 |
| ENCFF607VIS.tabix.bed.gz | 27.99 KB | 8708bd04d0f723a643a11e3c75e3f98f |
| ENCFF607VIS.tabix.bed.gz.dvc | 105.0 B | c211947df5fb27e79e0171c01dfe3a66 |
| ENCFF607VIS.tabix.bed.gz.tbi | 23.56 KB | 28c9df27a2b97e2aec6d3ecbb552a899 |
| ENCFF607VIS.tabix.bed.gz.tbi.dvc | 109.0 B | ae3586e7f321583dc058f19fe08e8225 |
| genomic_resource.yaml | 2.88 KB | ee3cc28e70f2d1bc01ab8a47f08335a4 |
| genomic_resource_original.yaml | 2.78 KB | 93417f4fde618aa3baeb6452d08c0812 |
| statistics/ |