TF_ChIP-seq_ENCSR911MML
TF_ChIP-seq ENCSR911MML [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3" and target="TCF3"]
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| Id: | TF_ChIP-seq/ENCSR911MML |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR911MML [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3" and target="TCF3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TCF3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN689UAB|/analyses/ENCAN689UAB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN689UAB|/analyses/ENCAN689UAB/} has in progress subobject document {9805330a-b138-4e66-abca-4696fa354af8|/documents/9805330a-b138-4e66-abca-4696fa354af8/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF902EKZ|/files/ENCFF902EKZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.20 and a self consistency ratio of 2.94. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF066OAK|/files/ENCFF066OAK/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.20 and a self consistency ratio of 2.94. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR911MML | float |
TF_ChIP-seq_ENCSR911MML |
TF_ChIP-seq ENCSR911MML [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3" and target="TCF3"]
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[9.69, 415] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF902EKZ.bed.gz | 98.14 KB | 285ae27724842bdb3bc64647cbaa0acf |
| ENCFF902EKZ.bed.gz.dvc | 100.0 B | 9c0ee6dd05e5291a8de1f38adb0fea14 |
| ENCFF902EKZ.tabix.bed.gz | 66.73 KB | 0a9d6a4253ad74facd221305987f5627 |
| ENCFF902EKZ.tabix.bed.gz.dvc | 105.0 B | a325a07b8f08501a003e279868dbbd05 |
| ENCFF902EKZ.tabix.bed.gz.tbi | 45.55 KB | 0633fcb4d788e0ed1846ae1b949c8122 |
| ENCFF902EKZ.tabix.bed.gz.tbi.dvc | 109.0 B | 3649885d48dd6f781b9fd6cc332f846d |
| genomic_resource.yaml | 2.94 KB | 34c9f1389aca60ac6739a4c5eaa79b5e |
| genomic_resource_original.yaml | 2.78 KB | 6b3b76566544ed17b48b893e91478df9 |
| statistics/ |