TF_ChIP-seq_ENCSR911JAX
TF_ChIP-seq ENCSR911JAX [biosample_summary="Homo sapiens prostate gland tissue male adult (37 years)" and target="POLR2A"]
×
| Id: | TF_ChIP-seq/ENCSR911JAX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR911JAX [biosamplesummary="Homo sapiens prostate gland tissue male adult (37 years)" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN451GLY|/analyses/ENCAN451GLY/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF574DCD|/files/ENCFF574DCD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF574DCD|/files/ENCFF574DCD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.30. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR911JAX | float |
TF_ChIP-seq_ENCSR911JAX |
TF_ChIP-seq ENCSR911JAX [biosample_summary="Homo sapiens prostate gland tissue male adult (37 years)" and target="POLR2A"]
|
|
[8.33, 773] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF678WCZ.bed.gz | 356.08 KB | 92fb849e0290b8bf5a7d6114c3ccb2ce |
| ENCFF678WCZ.bed.gz.dvc | 100.0 B | 70fdd3f38f95bab36743716f56d7ea18 |
| ENCFF678WCZ.tabix.bed.gz | 259.41 KB | 74f58f3b2a6e1d751262246aa9f83757 |
| ENCFF678WCZ.tabix.bed.gz.dvc | 106.0 B | 6de50959a195ef9cb85ea6a8544cfd35 |
| ENCFF678WCZ.tabix.bed.gz.tbi | 118.67 KB | 816a20433390641bc0fe902a0205425b |
| ENCFF678WCZ.tabix.bed.gz.tbi.dvc | 110.0 B | b57c9b8220240471f7e8dd1082953a83 |
| genomic_resource.yaml | 2.75 KB | cf236dfa1b2443f34c4e8a15d1f73ec8 |
| genomic_resource_original.yaml | 2.62 KB | e38042d1951f2dcafb16b8aff4b06248 |
| statistics/ |