TF_ChIP-seq_ENCSR911GFJ
TF_ChIP-seq ENCSR911GFJ [biosample_summary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR911GFJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR911GFJ [biosamplesummary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: File {ENCFF136LAP|/files/ENCFF136LAP/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN003OMK|/analyses/ENCAN003OMK/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF196CKN|/files/ENCFF196CKN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF196CKN|/files/ENCFF196CKN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.47. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR911GFJ | float |
TF_ChIP-seq_ENCSR911GFJ |
TF_ChIP-seq ENCSR911GFJ [biosample_summary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="CTCF"]
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[7.35, 2.82e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF136LAP.bed.gz | 639.16 KB | c7b0f4129596c4f3e6978adca81e9426 |
| ENCFF136LAP.bed.gz.dvc | 100.0 B | 00dccfb502c6776e2aab0819ea62db9a |
| ENCFF136LAP.tabix.bed.gz | 469.6 KB | 31a10f30006b8917f4198ddfb7b9dde6 |
| ENCFF136LAP.tabix.bed.gz.dvc | 106.0 B | 3399859c7685100b79071ff03382dd6a |
| ENCFF136LAP.tabix.bed.gz.tbi | 255.47 KB | d4677b67130ce3c5854e2b8bfd3802d5 |
| ENCFF136LAP.tabix.bed.gz.tbi.dvc | 110.0 B | 1ac74b6a2b1cf34de3f0dfeeb5c3c244 |
| genomic_resource.yaml | 2.95 KB | 983565463d53281a7f46b286298a929b |
| genomic_resource_original.yaml | 2.82 KB | 314dc28fc1edd1b0552244c47e52a735 |
| statistics/ |