TF_ChIP-seq_ENCSR910MUD
TF_ChIP-seq ENCSR910MUD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF138" and target="ZNF138"]
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| Id: | TF_ChIP-seq/ENCSR910MUD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR910MUD [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF138" and target="ZNF138"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF138 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN012FGF|/analyses/ENCAN012FGF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN012FGF|/analyses/ENCAN012FGF/} has in progress subobject document {c06560e3-110a-4c10-bcd7-bb23c88ab439|/documents/c06560e3-110a-4c10-bcd7-bb23c88ab439/} audit_warning: Processed alignments file {ENCFF696XWA|/files/ENCFF696XWA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline has 15720902 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF138-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF240KAL|/files/ENCFF240KAL/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF240KAL|/files/ENCFF240KAL/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.96. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF696XWA|/files/ENCFF696XWA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF696XWA|/files/ENCFF696XWA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.80. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR910MUD | float |
TF_ChIP-seq_ENCSR910MUD |
TF_ChIP-seq ENCSR910MUD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF138" and target="ZNF138"]
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[7.5, 447] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF389YCG.bed.gz | 160.52 KB | efeacea8f48241b0b04f57e4f6d77e47 |
| ENCFF389YCG.bed.gz.dvc | 100.0 B | d9e419bcf711410c363c8b82871e4228 |
| ENCFF389YCG.tabix.bed.gz | 123.19 KB | 321db3ac0f6655a30beedbad548eb93c |
| ENCFF389YCG.tabix.bed.gz.dvc | 106.0 B | 05bd66075d25589683ef384d45a7e0d0 |
| ENCFF389YCG.tabix.bed.gz.tbi | 61.05 KB | 9530aa739f2b4ad616bdf4a0e65c40b2 |
| ENCFF389YCG.tabix.bed.gz.tbi.dvc | 109.0 B | 442acbf9b94e7ae36e8456451ae66e78 |
| genomic_resource.yaml | 4.94 KB | 5f4dfe8835db0b7380f1aa212b3b85bb |
| genomic_resource_original.yaml | 4.77 KB | b00330a6bd7236529de8d5e6d06607e7 |
| statistics/ |