TF_ChIP-seq_ENCSR909GJR
TF_ChIP-seq ENCSR909GJR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD3" and target="MXD3"]
×
| Id: | TF_ChIP-seq/ENCSR909GJR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR909GJR [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD3" and target="MXD3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MXD3 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN087JAH|/analyses/ENCAN087JAH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF985DMC|/files/ENCFF985DMC/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF230UKQ|/files/ENCFF230UKQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF230UKQ|/files/ENCFF230UKQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.48. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR909GJR | float |
TF_ChIP-seq_ENCSR909GJR |
TF_ChIP-seq ENCSR909GJR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD3" and target="MXD3"]
|
|
[11.5, 584] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF985DMC.bed.gz | 314.31 KB | 886a3da7c7136ff18010c28bb64cbe76 |
| ENCFF985DMC.bed.gz.dvc | 100.0 B | 21f732b5431d4968b8601d9345ea8ed5 |
| ENCFF985DMC.tabix.bed.gz | 247.26 KB | 5b036c6841bfc27c584bff957ac405b6 |
| ENCFF985DMC.tabix.bed.gz.dvc | 106.0 B | de235664e39037517b1af07f23ae4ce1 |
| ENCFF985DMC.tabix.bed.gz.tbi | 101.77 KB | 0426677cbcdf01a0a324054f9f462d72 |
| ENCFF985DMC.tabix.bed.gz.tbi.dvc | 110.0 B | 034e81510a144d962dfc78b56381b332 |
| genomic_resource.yaml | 3.13 KB | d67168814a50c7024ab8f86df13dcd92 |
| genomic_resource_original.yaml | 2.97 KB | f36cbc530711ad533a4fe0ce607efacd |
| statistics/ |