TF_ChIP-seq_ENCSR908CMW
TF_ChIP-seq ENCSR908CMW [biosample_summary="Homo sapiens K562" and target="KDM1A"]
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| Id: | TF_ChIP-seq/ENCSR908CMW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR908CMW [biosamplesummary="Homo sapiens K562" and target="KDM1A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN860TJR|/analyses/ENCAN860TJR/} has in progress subobject document {32f73359-28fa-4f73-a0a0-2c5cf7a6376d|/documents/32f73359-28fa-4f73-a0a0-2c5cf7a6376d/} audit_internal_action: Released analysis {ENCAN860TJR|/analyses/ENCAN860TJR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF072EQN|/files/ENCFF072EQN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF072EQN|/files/ENCFF072EQN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.39. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF969WIN|/files/ENCFF969WIN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF969WIN|/files/ENCFF969WIN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.44. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR908CMW | float |
TF_ChIP-seq_ENCSR908CMW |
TF_ChIP-seq ENCSR908CMW [biosample_summary="Homo sapiens K562" and target="KDM1A"]
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[20.6, 7.89e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF346UGW.bed.gz | 777.06 KB | abf761c5c89a0b1a681d202e13fbbfeb |
| ENCFF346UGW.bed.gz.dvc | 100.0 B | c5911cd45651c90e40e1d95b23adb609 |
| ENCFF346UGW.tabix.bed.gz | 545.13 KB | ad33e9e1de9e3613dc1ef79f8d152f03 |
| ENCFF346UGW.tabix.bed.gz.dvc | 106.0 B | 1bbd525f6cdd630d7b1cf7064da8ff07 |
| ENCFF346UGW.tabix.bed.gz.tbi | 202.77 KB | ee9cde035c3eadebaa28e930a99f7195 |
| ENCFF346UGW.tabix.bed.gz.tbi.dvc | 110.0 B | 83cab513f3530565a6bcf49d44d4ccc6 |
| genomic_resource.yaml | 4.18 KB | 44b156c7a69c17f60789610c25002c7d |
| genomic_resource_original.yaml | 4.09 KB | ad8b3cf1d2acd54c9045aba77802957b |
| statistics/ |