TF_ChIP-seq_ENCSR906OMM
TF_ChIP-seq ENCSR906OMM [biosample_summary="Homo sapiens gastroesophageal sphincter tissue male adult (54 years)" and target="EP300"]
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| Id: | TF_ChIP-seq/ENCSR906OMM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR906OMM [biosamplesummary="Homo sapiens gastroesophageal sphincter tissue male adult (54 years)" and target="EP300"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN066GSR|/analyses/ENCAN066GSR/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF696DSP|/files/ENCFF696DSP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF696DSP|/files/ENCFF696DSP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.63. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR906OMM | float |
TF_ChIP-seq_ENCSR906OMM |
TF_ChIP-seq ENCSR906OMM [biosample_summary="Homo sapiens gastroesophageal sphincter tissue male adult (54 years)" and target="EP300"]
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[9.2, 1.83e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF150ABP.bed.gz | 43.55 KB | 82ec00c9b00f4be641952440a96add9b |
| ENCFF150ABP.bed.gz.dvc | 99.0 B | c3db3593a3502ce471cc4e592bf995bb |
| ENCFF150ABP.tabix.bed.gz | 28.07 KB | d617e7193faf03a6c616eca517f84a38 |
| ENCFF150ABP.tabix.bed.gz.dvc | 105.0 B | c27556d54edd3781e9c062b26895f4b8 |
| ENCFF150ABP.tabix.bed.gz.tbi | 24.52 KB | c172cc86223a41a40c090166636e45fd |
| ENCFF150ABP.tabix.bed.gz.tbi.dvc | 109.0 B | f324554fcfcd9e46ee653dea3e43f493 |
| genomic_resource.yaml | 2.78 KB | 840fe773de649b71bd60a89f01a0a79f |
| genomic_resource_original.yaml | 2.64 KB | 4391d82c70b5cf0886f5b816471fa013 |
| statistics/ |