TF_ChIP-seq_ENCSR906CWK
TF_ChIP-seq ENCSR906CWK [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFPM2" and target="ZFPM2"]
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| Id: | TF_ChIP-seq/ENCSR906CWK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR906CWK [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFPM2" and target="ZFPM2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZFPM2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN778RMM|/analyses/ENCAN778RMM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF201FCN|/files/ENCFF201FCN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF201FCN|/files/ENCFF201FCN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.76. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR906CWK | float |
TF_ChIP-seq_ENCSR906CWK |
TF_ChIP-seq ENCSR906CWK [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFPM2" and target="ZFPM2"]
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[17.4, 501] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF549NPY.bed.gz | 46.64 KB | b778c89ab1d46a4840fb66f8dc859edb |
| ENCFF549NPY.bed.gz.dvc | 99.0 B | 1a7147c3cf35c9eb8eb96f67d5306a36 |
| ENCFF549NPY.tabix.bed.gz | 30.64 KB | 97ab1415a74b835f39b9e9150ab225e4 |
| ENCFF549NPY.tabix.bed.gz.dvc | 105.0 B | a686a5c005243692986fd66e2175e5a4 |
| ENCFF549NPY.tabix.bed.gz.tbi | 24.3 KB | 2f1dddf54007c22e386ac95b9ad7929d |
| ENCFF549NPY.tabix.bed.gz.tbi.dvc | 109.0 B | 6bef097b8e78514bd3cf5b83c51c5ca5 |
| genomic_resource.yaml | 2.96 KB | 74b3d3c8bf3066cd99c3a759bd3b3e03 |
| genomic_resource_original.yaml | 2.8 KB | 945a31b4c562935775f13ed99e706b66 |
| statistics/ |