TF_ChIP-seq_ENCSR905MSY
TF_ChIP-seq ENCSR905MSY [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3" and target="FOXJ3"]
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| Id: | TF_ChIP-seq/ENCSR905MSY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR905MSY [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3" and target="FOXJ3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN841XCZ|/analyses/ENCAN841XCZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF595KUE|/files/ENCFF595KUE/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF595KUE|/files/ENCFF595KUE/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.61. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF638NKZ|/files/ENCFF638NKZ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF638NKZ|/files/ENCFF638NKZ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.35. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF117RRT|/files/ENCFF117RRT/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline have a rescue ratio of 1.38 and a self consistency ratio of 2.51. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR905MSY | float |
TF_ChIP-seq_ENCSR905MSY |
TF_ChIP-seq ENCSR905MSY [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3" and target="FOXJ3"]
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[8.19, 239] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF117RRT.bed.gz | 14.62 KB | 67c2f9f4178006a4c90cd8780a2c32a2 |
| ENCFF117RRT.bed.gz.dvc | 99.0 B | 059e03b09fb33b1fcb91e09e4ca0bcd7 |
| ENCFF117RRT.tabix.bed.gz | 10.01 KB | f1908e2d064a65db266391a5578f17aa |
| ENCFF117RRT.tabix.bed.gz.dvc | 105.0 B | b9f46a8fa29f62e5de9ae31e52fa12c7 |
| ENCFF117RRT.tabix.bed.gz.tbi | 11.68 KB | edf14e44eb6c42acb44a9ac65f2b0c6f |
| ENCFF117RRT.tabix.bed.gz.tbi.dvc | 109.0 B | 709cb4e7e8c3382a210e3ec7a582c286 |
| genomic_resource.yaml | 4.75 KB | 28eb4adcd6b8031af343c0e424b228da |
| genomic_resource_original.yaml | 4.59 KB | de4caaebca4be8f2b565629e67ea92c0 |
| statistics/ |