TF_ChIP-seq_ENCSR905BNO
TF_ChIP-seq ENCSR905BNO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF816" and target="ZNF816"]
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| Id: | TF_ChIP-seq/ENCSR905BNO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR905BNO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF816" and target="ZNF816"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF816 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN156GRL|/analyses/ENCAN156GRL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF644ZES|/files/ENCFF644ZES/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF644ZES|/files/ENCFF644ZES/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.84. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF753BON|/files/ENCFF753BON/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF753BON|/files/ENCFF753BON/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.72. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF994VNA|/files/ENCFF994VNA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.41 and a self consistency ratio of 3.49. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR905BNO | float |
TF_ChIP-seq_ENCSR905BNO |
TF_ChIP-seq ENCSR905BNO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF816" and target="ZNF816"]
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[12.4, 481] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF994VNA.bed.gz | 261.69 KB | e3afec38d137e86c8b8ffed76d8fd8dc |
| ENCFF994VNA.bed.gz.dvc | 100.0 B | cf8d565863c298fa074e1ee85b7c0a82 |
| ENCFF994VNA.tabix.bed.gz | 209.52 KB | fabcacc6193436bde0f72349069bb2ce |
| ENCFF994VNA.tabix.bed.gz.dvc | 106.0 B | e3d8d294db2612aaa5d750e509d3fb9a |
| ENCFF994VNA.tabix.bed.gz.tbi | 81.93 KB | 1f8789ef02761c25dddc2c804c301a12 |
| ENCFF994VNA.tabix.bed.gz.tbi.dvc | 109.0 B | 048d127693ca7c237e6e271b420f4ac0 |
| genomic_resource.yaml | 4.76 KB | be7e4743d2d2b76748142272063cc9b4 |
| genomic_resource_original.yaml | 4.59 KB | 22775658f571b83e578643d2e9ff1841 |
| statistics/ |