TF_ChIP-seq_ENCSR904JEY
TF_ChIP-seq ENCSR904JEY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF34" and target="ZNF34"]
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| Id: | TF_ChIP-seq/ENCSR904JEY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR904JEY [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF34" and target="ZNF34"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF34 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN791LVF|/analyses/ENCAN791LVF/} has in progress subobject document {f8843f65-a2dd-44b0-a03f-c11da2a61f30|/documents/f8843f65-a2dd-44b0-a03f-c11da2a61f30/} audit_internal_action: Released analysis {ENCAN791LVF|/analyses/ENCAN791LVF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF214WZB|/files/ENCFF214WZB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF214WZB|/files/ENCFF214WZB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.33. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF511KBH|/files/ENCFF511KBH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF511KBH|/files/ENCFF511KBH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.11. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF841BQO|/files/ENCFF841BQO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.13. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF739BBD|/files/ENCFF739BBD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.13. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR904JEY | float |
TF_ChIP-seq_ENCSR904JEY |
TF_ChIP-seq ENCSR904JEY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF34" and target="ZNF34"]
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[10.2, 245] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF841BQO.bed.gz | 173.87 KB | ba897fe0133e50a2847eb873d1c4627e |
| ENCFF841BQO.bed.gz.dvc | 100.0 B | ec76b60de279f884e83d3380f1d2913d |
| ENCFF841BQO.tabix.bed.gz | 142.19 KB | 4a212f6e85628162888c3035cceab982 |
| ENCFF841BQO.tabix.bed.gz.dvc | 106.0 B | 0004326117abb8c77041d7917f30baaf |
| ENCFF841BQO.tabix.bed.gz.tbi | 62.18 KB | e07b94aa3a00863c7b4e9fca45bed1e0 |
| ENCFF841BQO.tabix.bed.gz.tbi.dvc | 109.0 B | fc3f0f434ff77c222756e4d9c24fc2e0 |
| genomic_resource.yaml | 5.49 KB | e8ab5ed687203837702ef3ccd89a0b6c |
| genomic_resource_original.yaml | 5.32 KB | 9e83cc12fd64c1876c1fb244fd28ec71 |
| statistics/ |