TF_ChIP-seq_ENCSR903MVU
TF_ChIP-seq ENCSR903MVU [biosample_summary="Homo sapiens GM12878 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ" and target="MAZ"]
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| Id: | TF_ChIP-seq/ENCSR903MVU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR903MVU [biosamplesummary="Homo sapiens GM12878 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ" and target="MAZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MAZ output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN789DBI|/analyses/ENCAN789DBI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN789DBI|/analyses/ENCAN789DBI/} has in progress subobject document {6d3e61d8-85c5-4dd8-9800-1a94ffe3094d|/documents/6d3e61d8-85c5-4dd8-9800-1a94ffe3094d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF837FLU|/files/ENCFF837FLU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF837FLU|/files/ENCFF837FLU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.00. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF511RNV|/files/ENCFF511RNV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF511RNV|/files/ENCFF511RNV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.82. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR903MVU | float |
TF_ChIP-seq_ENCSR903MVU |
TF_ChIP-seq ENCSR903MVU [biosample_summary="Homo sapiens GM12878 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ" and target="MAZ"]
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[11.9, 3.04e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF250FJC.bed.gz | 406.47 KB | 04ae06e90566ea7070e243b46674fa14 |
| ENCFF250FJC.bed.gz.dvc | 100.0 B | a3816f933a35cf288b9857f5966c091f |
| ENCFF250FJC.tabix.bed.gz | 326.63 KB | 64a37eb1837d3bf7c59652e67b832b7d |
| ENCFF250FJC.tabix.bed.gz.dvc | 106.0 B | 2a13b194a10a45e9dada2d40f049952b |
| ENCFF250FJC.tabix.bed.gz.tbi | 121.84 KB | 016c2f22bc75e7f54a5f9fc1431a801b |
| ENCFF250FJC.tabix.bed.gz.tbi.dvc | 110.0 B | b4a8d062dfa77cd0b661e98e2ef25e2b |
| genomic_resource.yaml | 4.45 KB | b48bf8503be6d0cdda992153765cb9c6 |
| genomic_resource_original.yaml | 4.28 KB | 1e5f2a235b9b8a8e10b81bd20e7516e1 |
| statistics/ |