TF_ChIP-seq_ENCSR903JFF
TF_ChIP-seq ENCSR903JFF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF605" and target="ZNF605"]
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| Id: | TF_ChIP-seq/ENCSR903JFF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR903JFF [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF605" and target="ZNF605"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF605 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN384JNN|/analyses/ENCAN384JNN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF232CLF|/files/ENCFF232CLF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF232CLF|/files/ENCFF232CLF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.80. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF174HYA|/files/ENCFF174HYA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF174HYA|/files/ENCFF174HYA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.36. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR903JFF | float |
TF_ChIP-seq_ENCSR903JFF |
TF_ChIP-seq ENCSR903JFF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF605" and target="ZNF605"]
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[17.5, 607] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF856AHX.bed.gz | 494.35 KB | f0da6ceafd8ebfffa92681f476b9f2a1 |
| ENCFF856AHX.bed.gz.dvc | 100.0 B | 6959563d1d682fa9ee04fe4c392f6796 |
| ENCFF856AHX.tabix.bed.gz | 400.95 KB | 6897224409f718c4dd64b045ad9be27e |
| ENCFF856AHX.tabix.bed.gz.dvc | 106.0 B | b730a3b072a19f864470065d3f859e63 |
| ENCFF856AHX.tabix.bed.gz.tbi | 130.61 KB | b42fbd2cf61adf802b0dca85d52f31cb |
| ENCFF856AHX.tabix.bed.gz.tbi.dvc | 110.0 B | ba9799165da7b5b97573e33353736d99 |
| genomic_resource.yaml | 4.24 KB | 1d5826c3d5c76a63f6672648d1b82c88 |
| genomic_resource_original.yaml | 4.07 KB | 3ca25b51943f073d61608e1f09a7be8e |
| statistics/ |