TF_ChIP-seq_ENCSR903ELW
TF_ChIP-seq ENCSR903ELW [biosample_summary="Homo sapiens HepG2" and target="CREM"]
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| Id: | TF_ChIP-seq/ENCSR903ELW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR903ELW [biosamplesummary="Homo sapiens HepG2" and target="CREM"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN822UCZ|/analyses/ENCAN822UCZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF522CUT|/files/ENCFF522CUT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF522CUT|/files/ENCFF522CUT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.49. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR903ELW | float |
TF_ChIP-seq_ENCSR903ELW |
TF_ChIP-seq ENCSR903ELW [biosample_summary="Homo sapiens HepG2" and target="CREM"]
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[9.15, 1.07e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF871PDU.bed.gz | 525.72 KB | 44a6c0af55c00171b73b5ecbfb8d6e48 |
| ENCFF871PDU.bed.gz.dvc | 100.0 B | 5bd58fffbbb4cf6aaf7ba2fc4c410f45 |
| ENCFF871PDU.tabix.bed.gz | 393.33 KB | afb9d73508ec0e93f463964e80d27c6f |
| ENCFF871PDU.tabix.bed.gz.dvc | 106.0 B | f0ec4fe9103fd117a5058b1d2738b6db |
| ENCFF871PDU.tabix.bed.gz.tbi | 153.71 KB | 9b117d1c753f2cef113ee978000cc2f5 |
| ENCFF871PDU.tabix.bed.gz.tbi.dvc | 110.0 B | b763c62cae1920fc0ae8b64d64f5d5d0 |
| genomic_resource.yaml | 2.65 KB | 73b3fe2341b1aca89b23485d05efb640 |
| genomic_resource_original.yaml | 2.56 KB | b3a5b1050d867bcf7e262bcd334c2dc1 |
| statistics/ |