TF_ChIP-seq_ENCSR902SBX
TF_ChIP-seq ENCSR902SBX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens POGZ" and target="POGZ"]
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| Id: | TF_ChIP-seq/ENCSR902SBX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR902SBX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens POGZ" and target="POGZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens POGZ output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN149BIP|/analyses/ENCAN149BIP/} has in progress subobject document {0f77e985-a7f9-4616-a214-d0a57a5cef49|/documents/0f77e985-a7f9-4616-a214-d0a57a5cef49/} audit_internal_action: Released analysis {ENCAN149BIP|/analyses/ENCAN149BIP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF276KLF|/files/ENCFF276KLF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF276KLF|/files/ENCFF276KLF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.29. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR902SBX | float |
TF_ChIP-seq_ENCSR902SBX |
TF_ChIP-seq ENCSR902SBX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens POGZ" and target="POGZ"]
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[10.6, 550] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF175FFY.bed.gz | 603.2 KB | f720cf3dd61e4f5cf843c6c6a9800368 |
| ENCFF175FFY.bed.gz.dvc | 100.0 B | 07ef40a7003ae238ab113ac2be7ed9c7 |
| ENCFF175FFY.tabix.bed.gz | 467.76 KB | ddb78130594ab6aed2d7ca197e7e8002 |
| ENCFF175FFY.tabix.bed.gz.dvc | 106.0 B | d821a57405e92f2b96092d7d0ffa9959 |
| ENCFF175FFY.tabix.bed.gz.tbi | 176.67 KB | a93e90a842268d611c76c1a8f38f7c21 |
| ENCFF175FFY.tabix.bed.gz.tbi.dvc | 110.0 B | c31cd3592392646d96b627a18ce1e3d5 |
| genomic_resource.yaml | 3.17 KB | 0e0b5758fcc34b5284e853f88741d556 |
| genomic_resource_original.yaml | 3.01 KB | 0b9edf59c6f1e5640e77db839e3e4cce |
| statistics/ |