TF_ChIP-seq_ENCSR901VIE
TF_ChIP-seq ENCSR901VIE [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP1" and target="TFDP1"]
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| Id: | TF_ChIP-seq/ENCSR901VIE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR901VIE [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP1" and target="TFDP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TFDP1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN433XOB|/analyses/ENCAN433XOB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF825YAO|/files/ENCFF825YAO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF825YAO|/files/ENCFF825YAO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.98. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF762JCH|/files/ENCFF762JCH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF762JCH|/files/ENCFF762JCH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.74. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR901VIE | float |
TF_ChIP-seq_ENCSR901VIE |
TF_ChIP-seq ENCSR901VIE [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP1" and target="TFDP1"]
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[11.2, 825] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF044IDV.bed.gz | 386.05 KB | 9d448c84f857160afd5f9ca126d93fda |
| ENCFF044IDV.bed.gz.dvc | 100.0 B | 5711a2fd31d581dc1ba4e7ff97f35884 |
| ENCFF044IDV.tabix.bed.gz | 312.48 KB | 1edc46461740d6dce6ed2942a240df41 |
| ENCFF044IDV.tabix.bed.gz.dvc | 106.0 B | 2eca1d8178c66b118ea6939ed8238a80 |
| ENCFF044IDV.tabix.bed.gz.tbi | 113.8 KB | c74c2b45d8f4d4cdc3d3615f355054d4 |
| ENCFF044IDV.tabix.bed.gz.tbi.dvc | 110.0 B | f192640ddf87c0dc4f3b15df24c4ac43 |
| genomic_resource.yaml | 4.23 KB | a76cbf06ace4b0be4c840d4be7a42349 |
| genomic_resource_original.yaml | 4.07 KB | f3b437b4fb5158481c612dbc680fd547 |
| statistics/ |