TF_ChIP-seq_ENCSR901NIN
TF_ChIP-seq ENCSR901NIN [biosample_summary="Homo sapiens progenitor cell of endocrine pancreas" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR901NIN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR901NIN [biosamplesummary="Homo sapiens progenitor cell of endocrine pancreas" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (5 days) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN952VQJ|/analyses/ENCAN952VQJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF315VYX|/files/ENCFF315VYX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR901NIN | float |
TF_ChIP-seq_ENCSR901NIN |
TF_ChIP-seq ENCSR901NIN [biosample_summary="Homo sapiens progenitor cell of endocrine pancreas" and target="CTCF"]
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[3.83, 398] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF204MFL.bed.gz | 914.89 KB | 1dad98d9cd18470dadd0734f30970cb1 |
| ENCFF204MFL.bed.gz.dvc | 100.0 B | 4ea3f1c6eec321c8f7eddd92b5da0047 |
| ENCFF204MFL.tabix.bed.gz | 670.25 KB | fb28df7a9e224219872ee2f9cb6f3e28 |
| ENCFF204MFL.tabix.bed.gz.dvc | 106.0 B | 4fe6adfee248cad8a0787eb829f12e86 |
| ENCFF204MFL.tabix.bed.gz.tbi | 312.83 KB | 511cfc91493f62945ed6dfcf6c6c6d3b |
| ENCFF204MFL.tabix.bed.gz.tbi.dvc | 110.0 B | 40ae8e5f4f99bf600ec5006fb1b6d219 |
| genomic_resource.yaml | 2.12 KB | 6e0e3b7d3875c142f7aaad92eb11e60c |
| genomic_resource_original.yaml | 2.0 KB | d8d1112b9688e0b395ce75ec95beee64 |
| statistics/ |