TF_ChIP-seq_ENCSR900XDB
TF_ChIP-seq ENCSR900XDB [biosample_summary="Homo sapiens GM12878" and target="ZFP36"]
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| Id: | TF_ChIP-seq/ENCSR900XDB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR900XDB [biosamplesummary="Homo sapiens GM12878" and target="ZFP36"] |
| Description: |
status: released biological_replicates: Rep 4, Rep 5 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN849MCV|/analyses/ENCAN849MCV/} has in progress subobject document {1b4b7e5d-e48e-40f4-a79f-298e96a0e793|/documents/1b4b7e5d-e48e-40f4-a79f-298e96a0e793/} audit_internal_action: Released analysis {ENCAN849MCV|/analyses/ENCAN849MCV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF140KJO|/files/ENCFF140KJO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF140KJO|/files/ENCFF140KJO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.15. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR900XDB | float |
TF_ChIP-seq_ENCSR900XDB |
TF_ChIP-seq ENCSR900XDB [biosample_summary="Homo sapiens GM12878" and target="ZFP36"]
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[6.05, 514] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF627JQX.bed.gz | 187.12 KB | 8165c2b5217ec3b1f139b690912c4877 |
| ENCFF627JQX.bed.gz.dvc | 100.0 B | 2e49801378b1e500506d44a1d3eb6e02 |
| ENCFF627JQX.tabix.bed.gz | 125.17 KB | e4206e69e81f36dd2776abebe16c93fe |
| ENCFF627JQX.tabix.bed.gz.dvc | 106.0 B | 4dc263710b3ab320951d0eb70ad79990 |
| ENCFF627JQX.tabix.bed.gz.tbi | 83.44 KB | 5a8316f08f39ec0635b4e0b4bf54ba7c |
| ENCFF627JQX.tabix.bed.gz.tbi.dvc | 109.0 B | 3e12b83cb91bbf0e04de5763b4722f06 |
| genomic_resource.yaml | 3.42 KB | 14ef8f644a936c8371a29f9255e58759 |
| genomic_resource_original.yaml | 3.33 KB | 11f78a2d71f7fd250100906f60a1d2bc |
| statistics/ |