TF_ChIP-seq_ENCSR899GSH
TF_ChIP-seq ENCSR899GSH [biosample_summary="Homo sapiens K562" and target="RBM34"]
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| Id: | TF_ChIP-seq/ENCSR899GSH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR899GSH [biosamplesummary="Homo sapiens K562" and target="RBM34"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN125NAR|/analyses/ENCAN125NAR/} has in progress subobject document {56e67ab3-03e4-4cca-970c-7d8c257307f3|/documents/56e67ab3-03e4-4cca-970c-7d8c257307f3/} audit_internal_action: Released analysis {ENCAN125NAR|/analyses/ENCAN125NAR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF862AEO|/files/ENCFF862AEO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 9517737 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RBM34-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_not_compliant: Processed alignments file {ENCFF702GMB|/files/ENCFF702GMB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 9627777 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RBM34-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF071GJH|/files/ENCFF071GJH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.11 and a self consistency ratio of 4.30. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR899GSH | float |
TF_ChIP-seq_ENCSR899GSH |
TF_ChIP-seq ENCSR899GSH [biosample_summary="Homo sapiens K562" and target="RBM34"]
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[3.16, 76.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF071GJH.bed.gz | 20.43 KB | bc15746378833268d4a6ff7da7b26129 |
| ENCFF071GJH.bed.gz.dvc | 99.0 B | 60c21d75cd3eea2a4c21a3691ec398a5 |
| ENCFF071GJH.tabix.bed.gz | 14.71 KB | eca6af2bbaf04353cb18e0d50a374b1a |
| ENCFF071GJH.tabix.bed.gz.dvc | 105.0 B | a945829620d63d22c1ab9a2a6a7efadf |
| ENCFF071GJH.tabix.bed.gz.tbi | 14.52 KB | d492247e402233d6aeaedcb53bc04a2a |
| ENCFF071GJH.tabix.bed.gz.tbi.dvc | 109.0 B | 13c827ae0b7d604ffcc4133280b44e5a |
| genomic_resource.yaml | 3.12 KB | d0930247ff65cbea69ebd5e8540207a5 |
| genomic_resource_original.yaml | 3.02 KB | f835fb393bee3ea42c42cca152d0b324 |
| statistics/ |