TF_ChIP-seq_ENCSR898IDK
TF_ChIP-seq ENCSR898IDK [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF23" and target="ZNF23"]
×
| Id: | TF_ChIP-seq/ENCSR898IDK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR898IDK [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF23" and target="ZNF23"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF23 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN963CND|/analyses/ENCAN963CND/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN963CND|/analyses/ENCAN963CND/} has in progress subobject document {22f36211-672d-42cc-9d5a-2ac9dd1a931e|/documents/22f36211-672d-42cc-9d5a-2ac9dd1a931e/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF615ERF|/files/ENCFF615ERF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF615ERF|/files/ENCFF615ERF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.55. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR898IDK | float |
TF_ChIP-seq_ENCSR898IDK |
TF_ChIP-seq ENCSR898IDK [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF23" and target="ZNF23"]
|
|
[13.6, 1.19e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF063VRD.bed.gz | 39.63 KB | e39d7f6abf53af94c1aadcbcbb57500b |
| ENCFF063VRD.bed.gz.dvc | 99.0 B | 353a83ec61367ab53ff2f1865335d209 |
| ENCFF063VRD.tabix.bed.gz | 25.77 KB | 89e5b846bf41bfb916a1cc19b7f9d3dc |
| ENCFF063VRD.tabix.bed.gz.dvc | 105.0 B | 3a1f58d8cf6caca489a5c08d9d52bdc6 |
| ENCFF063VRD.tabix.bed.gz.tbi | 22.75 KB | 728b84610ad50de5f758491be74b8959 |
| ENCFF063VRD.tabix.bed.gz.tbi.dvc | 109.0 B | f535edfce80f114970d5d9bd95bcee87 |
| genomic_resource.yaml | 3.17 KB | 353c2bbcd7a05ae740fcd22c69409df6 |
| genomic_resource_original.yaml | 3.01 KB | d01cfa44606880516d9710f3e003d6e8 |
| statistics/ |