TF_ChIP-seq_ENCSR897MMC
TF_ChIP-seq ENCSR897MMC [biosample_summary="Homo sapiens GM12878" and target="JUNB"]
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| Id: | TF_ChIP-seq/ENCSR897MMC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR897MMC [biosamplesummary="Homo sapiens GM12878" and target="JUNB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF478XNA|/files/ENCFF478XNA/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN199TRK|/analyses/ENCAN199TRK/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF465ZPQ|/files/ENCFF465ZPQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF465ZPQ|/files/ENCFF465ZPQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.73. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF009WRQ|/files/ENCFF009WRQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF009WRQ|/files/ENCFF009WRQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.98. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR897MMC | float |
TF_ChIP-seq_ENCSR897MMC |
TF_ChIP-seq ENCSR897MMC [biosample_summary="Homo sapiens GM12878" and target="JUNB"]
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[6.41, 885] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF478XNA.bed.gz | 599.51 KB | 37798933b9716f7e18da22a18a547aea |
| ENCFF478XNA.bed.gz.dvc | 100.0 B | 83dff023d894be1b55633eb4df82f761 |
| ENCFF478XNA.tabix.bed.gz | 436.77 KB | 7c6bf0d9c7465a4546b3e0e2fd85c057 |
| ENCFF478XNA.tabix.bed.gz.dvc | 106.0 B | c0c31aa63c311be7244098d8eb24004b |
| ENCFF478XNA.tabix.bed.gz.tbi | 194.4 KB | 7d4ec487e80bf5f5ba176ca6b6abaf9b |
| ENCFF478XNA.tabix.bed.gz.tbi.dvc | 110.0 B | 72e7caa3f25a0a5091d68ac17c77806f |
| genomic_resource.yaml | 4.13 KB | 1c15e8ca6aa81d09a722feb3bf95cc1d |
| genomic_resource_original.yaml | 4.04 KB | db8b73e425ce12b605fb0dc3516b5645 |
| statistics/ |