TF_ChIP-seq_ENCSR895KNN
TF_ChIP-seq ENCSR895KNN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DZIP1" and target="DZIP1"]
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| Id: | TF_ChIP-seq/ENCSR895KNN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR895KNN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DZIP1" and target="DZIP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens DZIP1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN217VVJ|/analyses/ENCAN217VVJ/} has in progress subobject document {5ed627c1-390d-486d-8e81-db0478843fe0|/documents/5ed627c1-390d-486d-8e81-db0478843fe0/} audit_internal_action: Released analysis {ENCAN217VVJ|/analyses/ENCAN217VVJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF583CRB|/files/ENCFF583CRB/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF583CRB|/files/ENCFF583CRB/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.99. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF502YDX|/files/ENCFF502YDX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF502YDX|/files/ENCFF502YDX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.04. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR895KNN | float |
TF_ChIP-seq_ENCSR895KNN |
TF_ChIP-seq ENCSR895KNN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DZIP1" and target="DZIP1"]
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[12, 456] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF015STD.bed.gz | 170.42 KB | 159d1d8f795e5d85acafa41e8cecd4b0 |
| ENCFF015STD.bed.gz.dvc | 100.0 B | 18dabc8351579ffa8f9a48334ca087d9 |
| ENCFF015STD.tabix.bed.gz | 127.31 KB | b0d09d6ca85a7a05ab67ba519c0ce81d |
| ENCFF015STD.tabix.bed.gz.dvc | 106.0 B | da5abde23bc0bf1af4f38afa02109d00 |
| ENCFF015STD.tabix.bed.gz.tbi | 62.78 KB | 8acbb1965dad8cde3ac25498aba42c00 |
| ENCFF015STD.tabix.bed.gz.tbi.dvc | 109.0 B | 089fa0cf0564223be5c83ec296a69421 |
| genomic_resource.yaml | 4.44 KB | 8e688781dd00e49130ffab24ca7470a4 |
| genomic_resource_original.yaml | 4.28 KB | 5c3826ccbb85d937ce89bbd428350fa8 |
| statistics/ |