TF_ChIP-seq_ENCSR893QWP
TF_ChIP-seq ENCSR893QWP [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="REST"]
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| Id: | TF_ChIP-seq/ENCSR893QWP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR893QWP [biosamplesummary="Homo sapiens liver tissue female child (4 years)" and target="REST"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female child (4 years) output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN100JBA|/analyses/ENCAN100JBA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF894WFR|/files/ENCFF894WFR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16387930 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting REST-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF064JKD|/files/ENCFF064JKD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF064JKD|/files/ENCFF064JKD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.36. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR893QWP | float |
TF_ChIP-seq_ENCSR893QWP |
TF_ChIP-seq ENCSR893QWP [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="REST"]
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[6.16, 1.09e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF334FKO.bed.gz | 338.69 KB | c1655be4d3dc99d5b6dc81ee253bcce4 |
| ENCFF334FKO.bed.gz.dvc | 100.0 B | a4a14cf0393286c1aedf26b91026e1fb |
| ENCFF334FKO.tabix.bed.gz | 258.2 KB | a7b8cf918c66fbc4e894465a77ecb972 |
| ENCFF334FKO.tabix.bed.gz.dvc | 106.0 B | 47f8f79c63ff6db460a92990fa58969b |
| ENCFF334FKO.tabix.bed.gz.tbi | 120.1 KB | 0573be1232fa9f9279da52c434e8bcc2 |
| ENCFF334FKO.tabix.bed.gz.tbi.dvc | 110.0 B | 909f85a12bcd8c8e737dec21bbcf95a8 |
| genomic_resource.yaml | 3.54 KB | 323c79abbeb990d737d7517675b691d9 |
| genomic_resource_original.yaml | 3.42 KB | 4da0a92dc6a9bcaf638599267e17d6a0 |
| statistics/ |