TF_ChIP-seq_ENCSR893BAO
TF_ChIP-seq ENCSR893BAO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens REPIN1" and target="REPIN1"]
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| Id: | TF_ChIP-seq/ENCSR893BAO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR893BAO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens REPIN1" and target="REPIN1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens REPIN1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN726PCZ|/analyses/ENCAN726PCZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF849OLA|/files/ENCFF849OLA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 18188187 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting REPIN1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF452FUE|/files/ENCFF452FUE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 19926142 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting REPIN1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF452FUE|/files/ENCFF452FUE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF452FUE|/files/ENCFF452FUE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.28. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF676NOU|/files/ENCFF676NOU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.16 and a self consistency ratio of 2.37. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR893BAO | float |
TF_ChIP-seq_ENCSR893BAO |
TF_ChIP-seq ENCSR893BAO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens REPIN1" and target="REPIN1"]
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[7.99, 345] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF676NOU.bed.gz | 435.44 KB | e5ca6c1a5335133ccc5b3b7e001541fd |
| ENCFF676NOU.bed.gz.dvc | 100.0 B | dd730e7f365f9f4c9e6312c316827dcd |
| ENCFF676NOU.tabix.bed.gz | 347.4 KB | 42161bac7033880795c721137227b993 |
| ENCFF676NOU.tabix.bed.gz.dvc | 106.0 B | eee961677ae5296eeae43ee58e89520f |
| ENCFF676NOU.tabix.bed.gz.tbi | 135.65 KB | dd27ad96a19b4ec31ebb0526bf6c40ab |
| ENCFF676NOU.tabix.bed.gz.tbi.dvc | 110.0 B | 58e2204bf236e995643f3d9830f58231 |
| genomic_resource.yaml | 4.46 KB | 4955a14f64e4ac2214ecd24b33c895dc |
| genomic_resource_original.yaml | 4.3 KB | fcbad31b811f0ce10270450769cadd38 |
| statistics/ |