TF_ChIP-seq_ENCSR891KPP
TF_ChIP-seq ENCSR891KPP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF865" and target="ZNF865"]
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| Id: | TF_ChIP-seq/ENCSR891KPP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR891KPP [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF865" and target="ZNF865"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF865 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN802UKS|/analyses/ENCAN802UKS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF745LUZ|/files/ENCFF745LUZ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF745LUZ|/files/ENCFF745LUZ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.72. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF202QBG|/files/ENCFF202QBG/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF202QBG|/files/ENCFF202QBG/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.47. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF060MHX|/files/ENCFF060MHX/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline have a rescue ratio of 1.60 and a self consistency ratio of 2.47. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR891KPP | float |
TF_ChIP-seq_ENCSR891KPP |
TF_ChIP-seq ENCSR891KPP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF865" and target="ZNF865"]
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[7.4, 896] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF060MHX.bed.gz | 370.67 KB | b640c5f93b98d5efa76f6ead4dd565ed |
| ENCFF060MHX.bed.gz.dvc | 100.0 B | 71569336a789519324da00b396230edf |
| ENCFF060MHX.tabix.bed.gz | 273.81 KB | 376f7da716754dfcb225b44c2d5c974d |
| ENCFF060MHX.tabix.bed.gz.dvc | 106.0 B | c39f7342bcd98edb94d6401306cc1230 |
| ENCFF060MHX.tabix.bed.gz.tbi | 138.73 KB | 7cf4f825b166cb5b7a97fb233550f1dd |
| ENCFF060MHX.tabix.bed.gz.tbi.dvc | 110.0 B | 96ecedb05ba10b57d1bc41ee0b3e0f3b |
| genomic_resource.yaml | 4.76 KB | 65173b363c0ab7a2cb8ce9e6c416a78f |
| genomic_resource_original.yaml | 4.59 KB | 9fb0d5a7af6d02684718ba8f981a3d6c |
| statistics/ |