TF_ChIP-seq_ENCSR891KNP
TF_ChIP-seq ENCSR891KNP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF30" and target="ZNF30"]
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| Id: | TF_ChIP-seq/ENCSR891KNP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR891KNP [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF30" and target="ZNF30"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF30 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN036OOV|/analyses/ENCAN036OOV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN036OOV|/analyses/ENCAN036OOV/} has in progress subobject document {18474c93-f1ed-4d96-93c3-d0f531bae0ee|/documents/18474c93-f1ed-4d96-93c3-d0f531bae0ee/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF948FZM|/files/ENCFF948FZM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF948FZM|/files/ENCFF948FZM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR891KNP | float |
TF_ChIP-seq_ENCSR891KNP |
TF_ChIP-seq ENCSR891KNP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF30" and target="ZNF30"]
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[10.5, 456] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF290UUF.bed.gz | 98.73 KB | 47c5bcbda4819669ced71b85cd0a7309 |
| ENCFF290UUF.bed.gz.dvc | 100.0 B | b7671497494ca497826e377594593e08 |
| ENCFF290UUF.tabix.bed.gz | 73.83 KB | df30997330c741230f5578ee2046a345 |
| ENCFF290UUF.tabix.bed.gz.dvc | 105.0 B | c3b44a4065bf3cf7d93650a065dd4ee9 |
| ENCFF290UUF.tabix.bed.gz.tbi | 41.53 KB | c438755ebbee5f44d39350102ebbfb03 |
| ENCFF290UUF.tabix.bed.gz.tbi.dvc | 109.0 B | fe57e627bafcaa93a9e90402e37787c2 |
| genomic_resource.yaml | 3.18 KB | f4d9f5d825707a4e323db01b7f0844a5 |
| genomic_resource_original.yaml | 3.01 KB | c3b70e561888d8d51e567cdd9b19eb98 |
| statistics/ |