TF_ChIP-seq_ENCSR890DSP
TF_ChIP-seq ENCSR890DSP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF1" and target="IRF1"]
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| Id: | TF_ChIP-seq/ENCSR890DSP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR890DSP [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF1" and target="IRF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens IRF1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN345XGQ|/analyses/ENCAN345XGQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN345XGQ|/analyses/ENCAN345XGQ/} has in progress subobject document {bbf56a93-11fa-4945-bc24-41225e811985|/documents/bbf56a93-11fa-4945-bc24-41225e811985/} audit_warning: Processed alignments file {ENCFF873HDN|/files/ENCFF873HDN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 19309472 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting IRF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF639GTR|/files/ENCFF639GTR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF639GTR|/files/ENCFF639GTR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.51. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF873HDN|/files/ENCFF873HDN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF873HDN|/files/ENCFF873HDN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR890DSP | float |
TF_ChIP-seq_ENCSR890DSP |
TF_ChIP-seq ENCSR890DSP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF1" and target="IRF1"]
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[7.43, 403] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF368IYV.bed.gz | 77.85 KB | 390d993126e39df83ddbdde1a607bd6b |
| ENCFF368IYV.bed.gz.dvc | 99.0 B | f5a18c7e25f8f810395ef888942c61c4 |
| ENCFF368IYV.tabix.bed.gz | 57.74 KB | b6eff077935a26818de92fda12a3619b |
| ENCFF368IYV.tabix.bed.gz.dvc | 105.0 B | 12eeab26028753cf59d4e71d07918f27 |
| ENCFF368IYV.tabix.bed.gz.tbi | 36.71 KB | 9f6a5a93ff49fd10b28195921c7aa11b |
| ENCFF368IYV.tabix.bed.gz.tbi.dvc | 109.0 B | 577888e3f6f2d13f0a1dee072e9527aa |
| genomic_resource.yaml | 4.92 KB | 78c9620252f97d5bc7abceb0e1f0eb89 |
| genomic_resource_original.yaml | 4.76 KB | 248e81df8d016ac90cef6068c150c7d3 |
| statistics/ |