| Id: | TF_ChIP-seq/ENCSR888QFJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR888QFJ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BHLHA15" and target="BHLHA15"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens BHLHA15 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN308NXM|/analyses/ENCAN308NXM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF163ETI|/files/ENCFF163ETI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF163ETI|/files/ENCFF163ETI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.97. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF281XOO|/files/ENCFF281XOO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF281XOO|/files/ENCFF281XOO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.09. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF310TQK|/files/ENCFF310TQK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.58 and a self consistency ratio of 3.31. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR888QFJ | float |
TF_ChIP-seq_ENCSR888QFJ |
TF_ChIP-seq ENCSR888QFJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BHLHA15" and target="BHLHA15"]
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[11.2, 317] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF310TQK.bed.gz | 136.62 KB | be4d70ae6cbe7f1b4aa1375ea7c9d81a |
| ENCFF310TQK.bed.gz.dvc | 100.0 B | fec9611ab238044b97a9cca14ee236c7 |
| ENCFF310TQK.tabix.bed.gz | 102.08 KB | ce5ad3022200ab881dd4876dfac864f0 |
| ENCFF310TQK.tabix.bed.gz.dvc | 106.0 B | 157f9e3a710b86200d1a47e3caffc072 |
| ENCFF310TQK.tabix.bed.gz.tbi | 51.22 KB | 075eb63d173ab64ca58f8c817bb323a6 |
| ENCFF310TQK.tabix.bed.gz.tbi.dvc | 109.0 B | f4dafd71b844e0f99c8b9538265a3885 |
| genomic_resource.yaml | 4.77 KB | ac4d9f5e37863e1852fc455785b0d2da |
| genomic_resource_original.yaml | 4.6 KB | b29fca84e6fa79218ee12bf833dded66 |
| statistics/ |