TF_ChIP-seq_ENCSR887TWV
TF_ChIP-seq ENCSR887TWV [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF5" and target="ATF5"]
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| Id: | TF_ChIP-seq/ENCSR887TWV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR887TWV [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF5" and target="ATF5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ATF5 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN158KVW|/analyses/ENCAN158KVW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN158KVW|/analyses/ENCAN158KVW/} has in progress subobject document {364d9bc2-8749-4e5d-a4ec-cb9bfb7b0162|/documents/364d9bc2-8749-4e5d-a4ec-cb9bfb7b0162/} audit_warning: Processed alignments file {ENCFF531GQB|/files/ENCFF531GQB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 19554721 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ATF5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF442TXQ|/files/ENCFF442TXQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF442TXQ|/files/ENCFF442TXQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.72. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF531GQB|/files/ENCFF531GQB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF531GQB|/files/ENCFF531GQB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.43. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR887TWV | float |
TF_ChIP-seq_ENCSR887TWV |
TF_ChIP-seq ENCSR887TWV [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF5" and target="ATF5"]
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[8.48, 428] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF482BEV.bed.gz | 107.17 KB | d9a7a521a02ddf2564b3bd32c9cb4268 |
| ENCFF482BEV.bed.gz.dvc | 100.0 B | ba61fdf71f22dab39ee3f98c21378972 |
| ENCFF482BEV.tabix.bed.gz | 81.47 KB | e1e3387b28bc30f97c31ca24a2eff2cb |
| ENCFF482BEV.tabix.bed.gz.dvc | 105.0 B | 4d6986137997af7e39658ffd54a15674 |
| ENCFF482BEV.tabix.bed.gz.tbi | 43.87 KB | b57d437f528e77d7d6b52bf32403b1e2 |
| ENCFF482BEV.tabix.bed.gz.tbi.dvc | 109.0 B | c5fa671702dd949f0f11daab60d1df4b |
| genomic_resource.yaml | 4.92 KB | 0d707ffa677697bf533e80c82e5b0af7 |
| genomic_resource_original.yaml | 4.76 KB | 8eeb80697d81fd911cb32b24a21dff51 |
| statistics/ |