TF_ChIP-seq_ENCSR887LYD
TF_ChIP-seq ENCSR887LYD [biosample_summary="Homo sapiens HepG2" and target="SMARCC2"]
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| Id: | TF_ChIP-seq/ENCSR887LYD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR887LYD [biosamplesummary="Homo sapiens HepG2" and target="SMARCC2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN469HIF|/analyses/ENCAN469HIF/} has in progress subobject document {e6a48744-46c3-44ea-bc4a-f77b26bd6ea2|/documents/e6a48744-46c3-44ea-bc4a-f77b26bd6ea2/} audit_internal_action: Released analysis {ENCAN469HIF|/analyses/ENCAN469HIF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF903ECJ|/files/ENCFF903ECJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF903ECJ|/files/ENCFF903ECJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.43. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR887LYD | float |
TF_ChIP-seq_ENCSR887LYD |
TF_ChIP-seq ENCSR887LYD [biosample_summary="Homo sapiens HepG2" and target="SMARCC2"]
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[14.6, 230] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF795QXV.bed.gz | 31.78 KB | ba92464536a3b9e52f55e7e520c9c180 |
| ENCFF795QXV.bed.gz.dvc | 99.0 B | 7abd4d30e42a4e0d4d36d0cf1e6b8a17 |
| ENCFF795QXV.tabix.bed.gz | 20.24 KB | c88af4fda93390ca3f42b7cddd42d447 |
| ENCFF795QXV.tabix.bed.gz.dvc | 105.0 B | e258c6a7e506e1f1579c4648a3d14a4d |
| ENCFF795QXV.tabix.bed.gz.tbi | 20.78 KB | 10c2c9c57ed844406e9f955518788b8c |
| ENCFF795QXV.tabix.bed.gz.tbi.dvc | 109.0 B | e498a195a83c0e4269c775f0113b29e3 |
| genomic_resource.yaml | 2.88 KB | 3b9d4a1b092b82019a1a91ccb829603c |
| genomic_resource_original.yaml | 2.78 KB | 245b781a03180fdea6640febb8e21533 |
| statistics/ |