TF_ChIP-seq_ENCSR886VSY
TF_ChIP-seq ENCSR886VSY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF224" and target="ZNF224"]
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| Id: | TF_ChIP-seq/ENCSR886VSY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR886VSY [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF224" and target="ZNF224"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF224 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN008XBX|/analyses/ENCAN008XBX/} has in progress subobject document {c342b8de-058d-4447-b409-fbe5b873fe5a|/documents/c342b8de-058d-4447-b409-fbe5b873fe5a/} audit_internal_action: Released analysis {ENCAN008XBX|/analyses/ENCAN008XBX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF032MEM|/files/ENCFF032MEM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF032MEM|/files/ENCFF032MEM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.77. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF882ZCC|/files/ENCFF882ZCC/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF882ZCC|/files/ENCFF882ZCC/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.64. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR886VSY | float |
TF_ChIP-seq_ENCSR886VSY |
TF_ChIP-seq ENCSR886VSY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF224" and target="ZNF224"]
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[10.3, 357] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF772BAU.bed.gz | 214.54 KB | 78a3002eab0367ae0bb6f0c6170f712c |
| ENCFF772BAU.bed.gz.dvc | 100.0 B | e4fbbdf97ef9c5e62f630b3b6a02fa36 |
| ENCFF772BAU.tabix.bed.gz | 167.73 KB | 80dd02667122ef08768420f0410b55c2 |
| ENCFF772BAU.tabix.bed.gz.dvc | 106.0 B | 2c57d24c2976c45e5c4345cc5718a627 |
| ENCFF772BAU.tabix.bed.gz.tbi | 72.94 KB | 4cea4ea07658ef8d5d69cbdba55dc378 |
| ENCFF772BAU.tabix.bed.gz.tbi.dvc | 109.0 B | 012c6ca1f300d6d10b13426b6f152323 |
| genomic_resource.yaml | 4.45 KB | 30aa19bf0f1cc1151d6fbe72ddce4255 |
| genomic_resource_original.yaml | 4.29 KB | 287203bdb8dcc87c5bbf939a9bb51832 |
| statistics/ |