TF_ChIP-seq_ENCSR882YYL
TF_ChIP-seq ENCSR882YYL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF883" and target="ZNF883"]
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| Id: | TF_ChIP-seq/ENCSR882YYL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR882YYL [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF883" and target="ZNF883"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF883 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN951NIB|/analyses/ENCAN951NIB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN951NIB|/analyses/ENCAN951NIB/} has in progress subobject document {6de65068-d79f-404f-8990-c9241c8f5047|/documents/6de65068-d79f-404f-8990-c9241c8f5047/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF709HHQ|/files/ENCFF709HHQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF709HHQ|/files/ENCFF709HHQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.06. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF633EBR|/files/ENCFF633EBR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF633EBR|/files/ENCFF633EBR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.00. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR882YYL | float |
TF_ChIP-seq_ENCSR882YYL |
TF_ChIP-seq ENCSR882YYL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF883" and target="ZNF883"]
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[14.4, 564] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF189PKJ.bed.gz | 303.8 KB | 77f601cfbd114e75da0889b06c1dd80e |
| ENCFF189PKJ.bed.gz.dvc | 100.0 B | df5921d847d6016a0ea09fb29622f2ca |
| ENCFF189PKJ.tabix.bed.gz | 235.47 KB | 611f70a23879024958755a1ade59da06 |
| ENCFF189PKJ.tabix.bed.gz.dvc | 106.0 B | a844c389d142f2d3c75fd7d84cc06565 |
| ENCFF189PKJ.tabix.bed.gz.tbi | 94.55 KB | a179a83903326540876b283d1b3acd89 |
| ENCFF189PKJ.tabix.bed.gz.tbi.dvc | 109.0 B | 82f57673bb620782d100adaecb57de26 |
| genomic_resource.yaml | 4.45 KB | 252981fb852e8a94a7462823aa9a80dd |
| genomic_resource_original.yaml | 4.29 KB | 0cae3ecc8592e3d7da95e715bf698a5a |
| statistics/ |