TF_ChIP-seq_ENCSR879YNX
TF_ChIP-seq ENCSR879YNX [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF3" and target="ATF3"]
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| Id: | TF_ChIP-seq/ENCSR879YNX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR879YNX [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF3" and target="ATF3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ATF3 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN665NUM|/analyses/ENCAN665NUM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF018XFI|/files/ENCFF018XFI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF018XFI|/files/ENCFF018XFI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.50. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR879YNX | float |
TF_ChIP-seq_ENCSR879YNX |
TF_ChIP-seq ENCSR879YNX [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF3" and target="ATF3"]
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[8.92, 261] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF887NWU.bed.gz | 27.32 KB | 1e39baa53ccb7d058a11fd7e10031523 |
| ENCFF887NWU.bed.gz.dvc | 99.0 B | 9ef1b0e64fd5f3ed45b26f6d2d8679f7 |
| ENCFF887NWU.tabix.bed.gz | 18.89 KB | e96d113b4a8c71941391f1bbc08da706 |
| ENCFF887NWU.tabix.bed.gz.dvc | 105.0 B | a5a7280524e46860e06d4dc100f9f83c |
| ENCFF887NWU.tabix.bed.gz.tbi | 18.17 KB | 0b3c78cb39850f5ae1a8ce8fe914f41e |
| ENCFF887NWU.tabix.bed.gz.tbi.dvc | 109.0 B | c49ffea1551df9db54429b301c2b5631 |
| genomic_resource.yaml | 2.97 KB | 9aa906341b764a3b6f091b00c17e9efe |
| genomic_resource_original.yaml | 2.81 KB | fb9a1dbabaf6b442b5f2f2d552698bc9 |
| statistics/ |