TF_ChIP-seq_ENCSR879RGN
TF_ChIP-seq ENCSR879RGN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFHX3" and target="ZFHX3"]
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| Id: | TF_ChIP-seq/ENCSR879RGN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR879RGN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFHX3" and target="ZFHX3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZFHX3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN871UZU|/analyses/ENCAN871UZU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF666LCA|/files/ENCFF666LCA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF666LCA|/files/ENCFF666LCA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.30. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF083CMF|/files/ENCFF083CMF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF083CMF|/files/ENCFF083CMF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.04. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR879RGN | float |
TF_ChIP-seq_ENCSR879RGN |
TF_ChIP-seq ENCSR879RGN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFHX3" and target="ZFHX3"]
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[9.07, 487] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF139FEW.bed.gz | 189.27 KB | da472840cb0c8d9b8ce46691cec77582 |
| ENCFF139FEW.bed.gz.dvc | 100.0 B | 3514276709ffddba51bb57542b8ff0a2 |
| ENCFF139FEW.tabix.bed.gz | 138.74 KB | 6c762510ee0861fcf3b8e72de815df7b |
| ENCFF139FEW.tabix.bed.gz.dvc | 106.0 B | 203fed8aaef71efdc094bcfb037e3f08 |
| ENCFF139FEW.tabix.bed.gz.tbi | 73.7 KB | de508ed2322046053c43fa2cf1202349 |
| ENCFF139FEW.tabix.bed.gz.tbi.dvc | 109.0 B | c0e7164d03229e5ba09d15050edd0f00 |
| genomic_resource.yaml | 4.23 KB | eb4eb70b6ba198756774704af2589d29 |
| genomic_resource_original.yaml | 4.07 KB | 23ee1a3289f38b4d07bff76cfefd86d5 |
| statistics/ |