TF_ChIP-seq_ENCSR879HUU
TF_ChIP-seq ENCSR879HUU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB2" and target="GABPB2"]
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| Id: | TF_ChIP-seq/ENCSR879HUU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR879HUU [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB2" and target="GABPB2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GABPB2 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN987FYB|/analyses/ENCAN987FYB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF062QKH|/files/ENCFF062QKH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF062QKH|/files/ENCFF062QKH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.73. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR879HUU | float |
TF_ChIP-seq_ENCSR879HUU |
TF_ChIP-seq ENCSR879HUU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB2" and target="GABPB2"]
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[18.2, 634] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF103YZQ.bed.gz | 28.04 KB | 45ce38606570812f10bce3dc6f2a4bcd |
| ENCFF103YZQ.bed.gz.dvc | 99.0 B | 94b79e1d398f4ec1cb6cfcfe6ee83eec |
| ENCFF103YZQ.tabix.bed.gz | 17.7 KB | b209bce3ec25bff9ff25c58cdc0ab2b3 |
| ENCFF103YZQ.tabix.bed.gz.dvc | 105.0 B | 3ae86f76414d3de340f264c27e53abf6 |
| ENCFF103YZQ.tabix.bed.gz.tbi | 15.98 KB | 88bb74cc09db1c2f97335e5c944fcaa5 |
| ENCFF103YZQ.tabix.bed.gz.tbi.dvc | 109.0 B | 8c3192e719b25cbaea4c893d9f27abf2 |
| genomic_resource.yaml | 2.98 KB | 5567eca8e7fe931fbf261ded0428ac65 |
| genomic_resource_original.yaml | 2.82 KB | ddd48ebe6e3e28a8f6fc12ba7f829eff |
| statistics/ |