TF_ChIP-seq_ENCSR876UYH
TF_ChIP-seq ENCSR876UYH [biosample_summary="Homo sapiens MCF-7" and target="ZHX2"]
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| Id: | TF_ChIP-seq/ENCSR876UYH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR876UYH [biosamplesummary="Homo sapiens MCF-7" and target="ZHX2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN036BPU|/analyses/ENCAN036BPU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN036BPU|/analyses/ENCAN036BPU/} has in progress subobject document {302f447d-1d87-4e77-b589-daf3f0dfdb48|/documents/302f447d-1d87-4e77-b589-daf3f0dfdb48/} audit_warning: Processed alignments file {ENCFF302YCT|/files/ENCFF302YCT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17952302 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZHX2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF443WEJ|/files/ENCFF443WEJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.80 and a self consistency ratio of 5.43. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR876UYH | float |
TF_ChIP-seq_ENCSR876UYH |
TF_ChIP-seq ENCSR876UYH [biosample_summary="Homo sapiens MCF-7" and target="ZHX2"]
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[5.76, 390] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF443WEJ.bed.gz | 165.06 KB | f35bb6456332fdbe7f1b74d0deb4f5f1 |
| ENCFF443WEJ.bed.gz.dvc | 100.0 B | 1f9003784d86280b410d95cd361bf47c |
| ENCFF443WEJ.tabix.bed.gz | 120.97 KB | 98e6756f1a5f16b180a1c7d2241385ce |
| ENCFF443WEJ.tabix.bed.gz.dvc | 106.0 B | 877c850e7cddc753696777d95c9119a3 |
| ENCFF443WEJ.tabix.bed.gz.tbi | 66.62 KB | 9d15fdd64d4775e43d3c6cce03b194d3 |
| ENCFF443WEJ.tabix.bed.gz.tbi.dvc | 109.0 B | 52d66b4e08d99e6f58e680366c271a88 |
| genomic_resource.yaml | 2.6 KB | d8559bb37503875d1ef410b9c997e683 |
| genomic_resource_original.yaml | 2.5 KB | e54a6357db585ab2b0e72bb0c41196c3 |
| statistics/ |