TF_ChIP-seq_ENCSR875NEW
TF_ChIP-seq ENCSR875NEW [biosample_summary="Homo sapiens tibial nerve tissue female adult (53 years)" and target="CTCF"]
×
| Id: | TF_ChIP-seq/ENCSR875NEW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR875NEW [biosamplesummary="Homo sapiens tibial nerve tissue female adult (53 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN782JZD|/analyses/ENCAN782JZD/} has in progress subobject document {a06806a3-187c-4dd2-8f0e-44a076c45df9|/documents/a06806a3-187c-4dd2-8f0e-44a076c45df9/} audit_internal_action: Released analysis {ENCAN782JZD|/analyses/ENCAN782JZD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF448KFI|/files/ENCFF448KFI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF448KFI|/files/ENCFF448KFI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.67. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR875NEW | float |
TF_ChIP-seq_ENCSR875NEW |
TF_ChIP-seq ENCSR875NEW [biosample_summary="Homo sapiens tibial nerve tissue female adult (53 years)" and target="CTCF"]
|
|
[4.51, 484] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF728GND.bed.gz | 527.53 KB | 2cacd32f1c792c8a2a215203660dd51d |
| ENCFF728GND.bed.gz.dvc | 100.0 B | 50fd427f4a4acfdb6045dd64b0eccc5f |
| ENCFF728GND.tabix.bed.gz | 418.18 KB | 73574b620e81dd0daf687aa86d94b521 |
| ENCFF728GND.tabix.bed.gz.dvc | 106.0 B | eb619ef79659980a774e8bb8536c060b |
| ENCFF728GND.tabix.bed.gz.tbi | 220.06 KB | 4a5f33d596c908e98cb2bd6f4fe082c2 |
| ENCFF728GND.tabix.bed.gz.tbi.dvc | 110.0 B | e9d1f02c355c97db29c89bd2783e89af |
| genomic_resource.yaml | 2.96 KB | fd45085114ad95cae4504847fd09c384 |
| genomic_resource_original.yaml | 2.83 KB | cc7080e2c874afc1af87d79aa2f430db |
| statistics/ |