TF_ChIP-seq_ENCSR874AFU
TF_ChIP-seq ENCSR874AFU [biosample_summary="Homo sapiens GM12878" and target="IKZF1"]
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| Id: | TF_ChIP-seq/ENCSR874AFU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR874AFU [biosamplesummary="Homo sapiens GM12878" and target="IKZF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN726RNU|/analyses/ENCAN726RNU/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF968NOG|/files/ENCFF968NOG/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF580EVG|/files/ENCFF580EVG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF580EVG|/files/ENCFF580EVG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.54. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF625RFM|/files/ENCFF625RFM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF625RFM|/files/ENCFF625RFM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.26. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR874AFU | float |
TF_ChIP-seq_ENCSR874AFU |
TF_ChIP-seq ENCSR874AFU [biosample_summary="Homo sapiens GM12878" and target="IKZF1"]
|
|
[16.9, 6.78e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF968NOG.bed.gz | 1.22 MB | f70aa165714248edc8b78aa07f9b3a35 |
| ENCFF968NOG.bed.gz.dvc | 101.0 B | 1e876f726a5fddb26ab8577402e148c8 |
| ENCFF968NOG.tabix.bed.gz | 802.33 KB | e8fc96a349dc7b4c5fd6faa1c715f3f7 |
| ENCFF968NOG.tabix.bed.gz.dvc | 106.0 B | 4f920d63af1fde183dd47ab8131191d1 |
| ENCFF968NOG.tabix.bed.gz.tbi | 263.93 KB | d0619227e1ec7e56905429b7bee81612 |
| ENCFF968NOG.tabix.bed.gz.tbi.dvc | 110.0 B | c41b3a1a975721a03ebf91261e3c926c |
| genomic_resource.yaml | 4.13 KB | e91e1d141490ff7d698419ff45247981 |
| genomic_resource_original.yaml | 4.04 KB | fc11ada0cbdd509f384cd25247a63736 |
| statistics/ |