TF_ChIP-seq_ENCSR872BOU
TF_ChIP-seq ENCSR872BOU [biosample_summary="Homo sapiens HEK293T" and target="FOXK2"]
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| Id: | TF_ChIP-seq/ENCSR872BOU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR872BOU [biosamplesummary="Homo sapiens HEK293T" and target="FOXK2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN979JRY|/analyses/ENCAN979JRY/} has in progress subobject document {e3b4b3a9-ab7f-4f92-9960-f10e7d599a3f|/documents/e3b4b3a9-ab7f-4f92-9960-f10e7d599a3f/} audit_internal_action: Released analysis {ENCAN979JRY|/analyses/ENCAN979JRY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF148REU|/files/ENCFF148REU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF148REU|/files/ENCFF148REU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.54. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF846BDW|/files/ENCFF846BDW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF846BDW|/files/ENCFF846BDW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.21. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR872BOU | float |
TF_ChIP-seq_ENCSR872BOU |
TF_ChIP-seq ENCSR872BOU [biosample_summary="Homo sapiens HEK293T" and target="FOXK2"]
|
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[17.8, 4.22e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF226PMF.bed.gz | 29.27 KB | 699f61425635651714d3d7b37db49114 |
| ENCFF226PMF.bed.gz.dvc | 99.0 B | 7fcd3e24906fd56b99fede87fdd7eea5 |
| ENCFF226PMF.tabix.bed.gz | 20.39 KB | 6a042624942ae78c1cc089cb08308787 |
| ENCFF226PMF.tabix.bed.gz.dvc | 105.0 B | e1f51ff35a8d3dbb7816ee80e20f156d |
| ENCFF226PMF.tabix.bed.gz.tbi | 17.65 KB | 3b2b0a7e1a3330b54f9106bb0e046409 |
| ENCFF226PMF.tabix.bed.gz.tbi.dvc | 109.0 B | a9d6bd2c6abb6cbc21c502606438d983 |
| genomic_resource.yaml | 4.19 KB | 42efdd4cde9d6ef2c5fbc70350ffe503 |
| genomic_resource_original.yaml | 4.09 KB | 375a8737eb73580efe3d3a5fcc48c11a |
| statistics/ |