TF_ChIP-seq_ENCSR871VNN
TF_ChIP-seq ENCSR871VNN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF274" and target="ZNF274"]
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| Id: | TF_ChIP-seq/ENCSR871VNN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR871VNN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF274" and target="ZNF274"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF274 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN987LWV|/analyses/ENCAN987LWV/} has in progress subobject document {9d770065-9e6c-4b5a-97a6-9f1b5a91bd63|/documents/9d770065-9e6c-4b5a-97a6-9f1b5a91bd63/} audit_internal_action: Released analysis {ENCAN987LWV|/analyses/ENCAN987LWV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF938FSS|/files/ENCFF938FSS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF938FSS|/files/ENCFF938FSS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.50. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF496EZU|/files/ENCFF496EZU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF496EZU|/files/ENCFF496EZU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.47. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR871VNN | float |
TF_ChIP-seq_ENCSR871VNN |
TF_ChIP-seq ENCSR871VNN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF274" and target="ZNF274"]
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[14.5, 542] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF823WVL.bed.gz | 327.0 KB | 0b098a45075e7ee158e074d6e132e39a |
| ENCFF823WVL.bed.gz.dvc | 100.0 B | c72e247c42df777f235e71f0b00d8c76 |
| ENCFF823WVL.tabix.bed.gz | 249.26 KB | ef77f64ec33c8f03d3c462c1fb4ceb99 |
| ENCFF823WVL.tabix.bed.gz.dvc | 106.0 B | a5d59286504d4068d291cea85022ad0a |
| ENCFF823WVL.tabix.bed.gz.tbi | 100.42 KB | a48e40d067a9c681c9da42059648caa9 |
| ENCFF823WVL.tabix.bed.gz.tbi.dvc | 110.0 B | 0e6cca16ec7056d2beb2b93d72c4c33a |
| genomic_resource.yaml | 4.45 KB | 924447081433cb112e9fe9cbfaec6d63 |
| genomic_resource_original.yaml | 4.29 KB | 36f691f75d69bcf375f7b63fced72d88 |
| statistics/ |