TF_ChIP-seq_ENCSR871TKJ
TF_ChIP-seq ENCSR871TKJ [biosample_summary="Homo sapiens K562" and target="THRAP3"]
×
| Id: | TF_ChIP-seq/ENCSR871TKJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR871TKJ [biosamplesummary="Homo sapiens K562" and target="THRAP3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF354UUL|/files/ENCFF354UUL/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN767GOF|/analyses/ENCAN767GOF/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF406TJQ|/files/ENCFF406TJQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF406TJQ|/files/ENCFF406TJQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.98. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF446HGS|/files/ENCFF446HGS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF446HGS|/files/ENCFF446HGS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.82. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF354UUL|/files/ENCFF354UUL/}, {ENCFF302XKF|/files/ENCFF302XKF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.78 and a self consistency ratio of 2.94. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF641WUZ|/files/ENCFF641WUZ/}, {ENCFF381QUN|/files/ENCFF381QUN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.78 and a self consistency ratio of 2.94. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR871TKJ | float |
TF_ChIP-seq_ENCSR871TKJ |
TF_ChIP-seq ENCSR871TKJ [biosample_summary="Homo sapiens K562" and target="THRAP3"]
|
|
[21.4, 1.68e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF354UUL.bed.gz | 85.97 KB | a01682d2085868345e98e93637c59466 |
| ENCFF354UUL.bed.gz.dvc | 99.0 B | bf723a7b95c009314bbd6a4fbc6db54a |
| ENCFF354UUL.tabix.bed.gz | 58.34 KB | ffcc1e72cae2159efeee08e7fe34b8f5 |
| ENCFF354UUL.tabix.bed.gz.dvc | 105.0 B | fe9cba2768578e5a8546178fd687e1d4 |
| ENCFF354UUL.tabix.bed.gz.tbi | 36.98 KB | 4117f585ccb396327e6925f59652b628 |
| ENCFF354UUL.tabix.bed.gz.tbi.dvc | 109.0 B | 3a935419cdd571394a5077ab1a53472b |
| genomic_resource.yaml | 5.58 KB | f483da7821d873298f7bf348a886efa1 |
| genomic_resource_original.yaml | 5.48 KB | 2e75b312ef8fe426355691721c86b7f3 |
| statistics/ |