TF_ChIP-seq_ENCSR871MKQ
TF_ChIP-seq ENCSR871MKQ [biosample_summary="Homo sapiens H9" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR871MKQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR871MKQ [biosamplesummary="Homo sapiens H9" and target="CTCF"] |
| Description: |
status: archived biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN559SRR|/analyses/ENCAN559SRR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF037JZA|/files/ENCFF037JZA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF037JZA|/files/ENCFF037JZA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.78. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR871MKQ | float |
TF_ChIP-seq_ENCSR871MKQ |
TF_ChIP-seq ENCSR871MKQ [biosample_summary="Homo sapiens H9" and target="CTCF"]
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[7.4, 794] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF137DEE.bed.gz | 1.27 MB | 21820e5cd51f4f1f22323df7afdeaba4 |
| ENCFF137DEE.bed.gz.dvc | 101.0 B | 85c6b1c28157135330cfe57cfeaabda9 |
| ENCFF137DEE.tabix.bed.gz | 950.27 KB | 40fca8e9e40a7f87b17513a3e21df0e6 |
| ENCFF137DEE.tabix.bed.gz.dvc | 106.0 B | 82cc0ad1d58a9a396c67b13fff734b79 |
| ENCFF137DEE.tabix.bed.gz.tbi | 429.54 KB | 25c1953be2351b91264df8ffa47c708c |
| ENCFF137DEE.tabix.bed.gz.tbi.dvc | 110.0 B | e7f614eb5e8643432a6fa74a6604ec8e |
| genomic_resource.yaml | 2.64 KB | 85b86fdee6629646faefdc33f8bababa |
| genomic_resource_original.yaml | 2.55 KB | 500e50daec689b90582b054fe78a0252 |
| statistics/ |