TF_ChIP-seq_ENCSR871EQD
TF_ChIP-seq ENCSR871EQD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens POU2F1" and target="POU2F1"]
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| Id: | TF_ChIP-seq/ENCSR871EQD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR871EQD [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens POU2F1" and target="POU2F1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens POU2F1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN380VCE|/analyses/ENCAN380VCE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF359GYR|/files/ENCFF359GYR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF359GYR|/files/ENCFF359GYR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.84. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF710VDH|/files/ENCFF710VDH/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF710VDH|/files/ENCFF710VDH/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.97. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR871EQD | float |
TF_ChIP-seq_ENCSR871EQD |
TF_ChIP-seq ENCSR871EQD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens POU2F1" and target="POU2F1"]
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[12.7, 744] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF804WYO.bed.gz | 713.49 KB | 44fd7c7a83cc2c042d6fbcf883970aa6 |
| ENCFF804WYO.bed.gz.dvc | 100.0 B | ee4837fe3dd0a7297e059b3787c75f33 |
| ENCFF804WYO.tabix.bed.gz | 606.44 KB | ec06d83e5cbbecfc97a05d885eea162c |
| ENCFF804WYO.tabix.bed.gz.dvc | 106.0 B | 67559208643be04e336f7f9ab47e1a86 |
| ENCFF804WYO.tabix.bed.gz.tbi | 183.56 KB | ea5a742f06606b6f3f4b120dd38f9ac3 |
| ENCFF804WYO.tabix.bed.gz.tbi.dvc | 110.0 B | 3ab9b50ec53d221aa12d899b25ce7496 |
| genomic_resource.yaml | 4.24 KB | 19cec61aeba148133d48453100d9f027 |
| genomic_resource_original.yaml | 4.07 KB | 98c2f47e1704499f3d1baf8ec907655d |
| statistics/ |