TF_ChIP-seq_ENCSR869IUD
TF_ChIP-seq ENCSR869IUD [biosample_summary="Homo sapiens K562" and target="ATF2"]
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| Id: | TF_ChIP-seq/ENCSR869IUD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR869IUD [biosamplesummary="Homo sapiens K562" and target="ATF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF803FHN|/files/ENCFF803FHN/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN155TKS|/analyses/ENCAN155TKS/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF883MZR|/files/ENCFF883MZR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14445071 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ATF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF719FYJ|/files/ENCFF719FYJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF719FYJ|/files/ENCFF719FYJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.22. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF883MZR|/files/ENCFF883MZR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF883MZR|/files/ENCFF883MZR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.33. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR869IUD | float |
TF_ChIP-seq_ENCSR869IUD |
TF_ChIP-seq ENCSR869IUD [biosample_summary="Homo sapiens K562" and target="ATF2"]
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[9.01, 2.54e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF803FHN.bed.gz | 790.49 KB | 7add0259e2d935a4afcb4e8316e0e26c |
| ENCFF803FHN.bed.gz.dvc | 100.0 B | e6f7850b0d75b63bfd8974103a8b6df7 |
| ENCFF803FHN.tabix.bed.gz | 558.54 KB | e734d1bac403205cff534111367dcc21 |
| ENCFF803FHN.tabix.bed.gz.dvc | 106.0 B | 1f7ae512683e13df1cec830f90f39a60 |
| ENCFF803FHN.tabix.bed.gz.tbi | 303.32 KB | 5e90b91d73297605c386bddf266faa8d |
| ENCFF803FHN.tabix.bed.gz.tbi.dvc | 110.0 B | e628f296a8a753f7dd2907790914ee84 |
| genomic_resource.yaml | 4.97 KB | 33dceff8987279c9a99644162960f523 |
| genomic_resource_original.yaml | 4.88 KB | fb21f21e2eeed195e9441fdcb87fbf77 |
| statistics/ |