TF_ChIP-seq_ENCSR867WPH
TF_ChIP-seq ENCSR867WPH [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="REST"]
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| Id: | TF_ChIP-seq/ENCSR867WPH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR867WPH [biosamplesummary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="REST"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (32 years) with nonobstructive coronary artery disease output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN057TGT|/analyses/ENCAN057TGT/} has in progress subobject document {d07f64f9-c291-467d-b906-fd6a60356681|/documents/d07f64f9-c291-467d-b906-fd6a60356681/} audit_internal_action: Released analysis {ENCAN057TGT|/analyses/ENCAN057TGT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF291TFU|/files/ENCFF291TFU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF291TFU|/files/ENCFF291TFU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.68. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR867WPH | float |
TF_ChIP-seq_ENCSR867WPH |
TF_ChIP-seq ENCSR867WPH [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="REST"]
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[8.29, 1.03e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF044GNV.bed.gz | 617.45 KB | 815164766f1611224f36cab68eb66b2c |
| ENCFF044GNV.bed.gz.dvc | 100.0 B | 9739312f13cd12605ee8b29b10215f7f |
| ENCFF044GNV.tabix.bed.gz | 481.39 KB | cf06fc80bb51b8dfcd777dea9069d218 |
| ENCFF044GNV.tabix.bed.gz.dvc | 106.0 B | 0c9759e06d957d6f222ba26243cf0d74 |
| ENCFF044GNV.tabix.bed.gz.tbi | 188.04 KB | 728690c38997ff923b16c6375a4d828b |
| ENCFF044GNV.tabix.bed.gz.tbi.dvc | 110.0 B | ff374f0a28fe2b9ebb9ab169d47bc3ff |
| genomic_resource.yaml | 3.51 KB | 4025869bce98ba7cf02005f5fb16d51a |
| genomic_resource_original.yaml | 3.35 KB | cdc433da27470ceb9b4de3133ddcb99c |
| statistics/ |