TF_ChIP-seq_ENCSR867MET
TF_ChIP-seq ENCSR867MET [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens THRB" and target="THRB"]
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| Id: | TF_ChIP-seq/ENCSR867MET |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR867MET [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens THRB" and target="THRB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens THRB output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN785ICK|/analyses/ENCAN785ICK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF871QFN|/files/ENCFF871QFN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF871QFN|/files/ENCFF871QFN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.84. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF652VJU|/files/ENCFF652VJU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF652VJU|/files/ENCFF652VJU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.94. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR867MET | float |
TF_ChIP-seq_ENCSR867MET |
TF_ChIP-seq ENCSR867MET [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens THRB" and target="THRB"]
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[23.4, 2.61e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF906PUB.bed.gz | 205.99 KB | b08ff8a05bb5fc64214176f88ac2e845 |
| ENCFF906PUB.bed.gz.dvc | 100.0 B | 667a881462d5301f10035c3d55035b32 |
| ENCFF906PUB.tabix.bed.gz | 133.4 KB | d66ea5fd8159fba8f749fcd9dd878cf7 |
| ENCFF906PUB.tabix.bed.gz.dvc | 106.0 B | e0facafaa08a93caffc5c748d3cae400 |
| ENCFF906PUB.tabix.bed.gz.tbi | 77.01 KB | daabf67df06435184af78fec1fe6c0a6 |
| ENCFF906PUB.tabix.bed.gz.tbi.dvc | 109.0 B | 19cbf8ebae6ab13cef72d9c5ee91e68d |
| genomic_resource.yaml | 4.35 KB | 659e86d932cdde7c5a865c02486d30e8 |
| genomic_resource_original.yaml | 4.19 KB | b28c9c3ddf016614e3922da085c8d3d5 |
| statistics/ |