TF_ChIP-seq_ENCSR866VOW
TF_ChIP-seq ENCSR866VOW [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens CBFB" and target="CBFB"]
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| Id: | TF_ChIP-seq/ENCSR866VOW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR866VOW [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens CBFB" and target="CBFB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens CBFB output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN551NQM|/analyses/ENCAN551NQM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF888OPC|/files/ENCFF888OPC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 16917932 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CBFB-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF961YUB|/files/ENCFF961YUB/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF961YUB|/files/ENCFF961YUB/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.99. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF888OPC|/files/ENCFF888OPC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF888OPC|/files/ENCFF888OPC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.37. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR866VOW | float |
TF_ChIP-seq_ENCSR866VOW |
TF_ChIP-seq ENCSR866VOW [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens CBFB" and target="CBFB"]
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[7.38, 336] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF341OPF.bed.gz | 85.64 KB | ab54bb92e201de5a0842ad0c9f687081 |
| ENCFF341OPF.bed.gz.dvc | 99.0 B | 00296ffd3b934850131d09ba10098744 |
| ENCFF341OPF.tabix.bed.gz | 61.59 KB | c7f99108a398ba88ebf847920f2d61d8 |
| ENCFF341OPF.tabix.bed.gz.dvc | 105.0 B | bf0dc4255c34b99ae2b2a67a8e802b13 |
| ENCFF341OPF.tabix.bed.gz.tbi | 40.58 KB | 78bac0c7a92c41ac05ba6a9a1534a563 |
| ENCFF341OPF.tabix.bed.gz.tbi.dvc | 109.0 B | dc1fc4ce3afd402fa84ad56cd125167c |
| genomic_resource.yaml | 4.71 KB | 99a9c8ac699ca17442981606b3fbcdce |
| genomic_resource_original.yaml | 4.54 KB | d8d149a6f8958c8e689f53a55e52d66a |
| statistics/ |