TF_ChIP-seq_ENCSR866QPZ
TF_ChIP-seq ENCSR866QPZ [biosample_summary="Homo sapiens MCF-7" and target="ATF7"]
×
| Id: | TF_ChIP-seq/ENCSR866QPZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR866QPZ [biosamplesummary="Homo sapiens MCF-7" and target="ATF7"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN397SQJ|/analyses/ENCAN397SQJ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF194ECV|/files/ENCFF194ECV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16530825 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ATF7-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF194ECV|/files/ENCFF194ECV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF194ECV|/files/ENCFF194ECV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.36. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR866QPZ | float |
TF_ChIP-seq_ENCSR866QPZ |
TF_ChIP-seq ENCSR866QPZ [biosample_summary="Homo sapiens MCF-7" and target="ATF7"]
|
|
[26.8, 4.22e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF343ULZ.bed.gz | 424.54 KB | 4ad000f92723a9df7fab2b70ff4cf1c9 |
| ENCFF343ULZ.bed.gz.dvc | 100.0 B | 312f0ca616059571f3420d722c3a1868 |
| ENCFF343ULZ.tabix.bed.gz | 340.11 KB | 9d2af874b81383810f2ae4fb3f62e943 |
| ENCFF343ULZ.tabix.bed.gz.dvc | 106.0 B | 1ea8afd413922bb5e4ff1b8894d9577f |
| ENCFF343ULZ.tabix.bed.gz.tbi | 202.54 KB | 9cc9aecb6c8116a7c4b27dc2c07377b3 |
| ENCFF343ULZ.tabix.bed.gz.tbi.dvc | 110.0 B | bf407040ddb8e57c3b191a54a1420d77 |
| genomic_resource.yaml | 3.49 KB | 31f6b745c87e254b3fa95a493ce8f2ed |
| genomic_resource_original.yaml | 3.39 KB | 4189e02f90faa0ac14d96f72e937d254 |
| statistics/ |